Bioinformatics tools

PPA description

DEPRECATED: This effort has effectively been superseded by BioBuilds.

Ubuntu packages for various bioinformatics tools that I frequently use, mostly for analysis of next-gen sequencing (NGS) data, as well as tools for running Ubuntu in the cloud, especially on Amazon Web Services (AWS).

These packages are generally more recent versions of various software packages for the current Ubuntu LTS release.

Adding this PPA to your system

You can update your system with unsupported packages from this untrusted PPA by adding ppa:chenghlee/bifx-tools to your system's Software Sources. (Read about installing)

sudo add-apt-repository ppa:chenghlee/bifx-tools
sudo apt update
        
Technical details about this PPA

This PPA can be added to your system manually by copying the lines below and adding them to your system's software sources.

deb https://ppa.launchpadcontent.net/chenghlee/bifx-tools/ubuntu precise main 
deb-src https://ppa.launchpadcontent.net/chenghlee/bifx-tools/ubuntu precise main 
Signing key:
1024R/8EBDBFE661B6ABEFE1395D73B1503307D35D1042 (What is this?)
Fingerprint:
8EBDBFE661B6ABEFE1395D73B1503307D35D1042

For questions and bugs with software in this PPA please contact Cheng H. Lee.

PPA statistics

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Overview of published packages

18 of 8 results
Package Version Uploaded by
bfast 0.7.0a-2 Cheng H. Lee ()
bowtie 0.12.8-1ubuntu1 Cheng H. Lee ()
bowtie2 2.0.0-beta7-1ubuntu1 Cheng H. Lee ()
bwa 0.6.2-1ubuntu1 Cheng H. Lee ()
cloud-init 0.7.0-0ubuntu2.2~precise2 Cheng H. Lee ()
ec2-api-tools 1.6.1.5-0ubuntu1 Cheng H. Lee ()
pyasn1 0.1.4-1ubuntu1 Cheng H. Lee ()
python-boto 2.6.0-0ubuntu0 Cheng H. Lee ()
18 of 8 results

Latest updates

  • cloud-init 589 weeks ago
    Successfully built
  • pyasn1 606 weeks ago
    Successfully built
  • python-boto 606 weeks ago
    Successfully built
  • bowtie2 610 weeks ago
    Successfully built
  • bowtie 610 weeks ago
    Successfully built